4d-nucleome

NucleoMap

A computational tool for identifying nucleosomes in ultra-high resolution contact maps.

ECHO

A deep learning model for characterizing collaborative transcription regulation.

EPCOT

A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome.

CAESAR

A deep learning model for connecting high-resolution 3D chromatin organization with epigenomics.

scHi-C embedding

The first computational embedding method for single cells in terms of their chromatin organization.